3.I.6E3 . \mathrm{I} . 6 \mathrm{E} \quad

Mathematical Biology
Part II, 2005

Let xx be the concentration of a binary master sequence of length LL and let yy be the total concentration of all mutant sequences. Master sequences try to self-replicate at a total rate axa x, but each independent digit is only copied correctly with probability qq. Mutant sequences self-replicate at a total rate byb y, where a>ba>b, and the probability of mutation back to the master sequence is negligible.

(a) The evolution of xx is given by

dxdt=aqLx\frac{d x}{d t}=a q^{L} x

Write down the corresponding equation for yy and derive a differential equation for the master-to-mutant ratio z=x/yz=x / y.

(b) What is the maximum length LmaxL_{\max } for which there is a positive steady-state value of zz ? Is the positive steady state stable when it exists?

(c) Obtain a first-order approximation to LmaxL_{\max } assuming that both 1q11-q \ll 1 and s1s \ll 1, where the selection coefficient ss is defined by b=a(1s)b=a(1-s).