2.II.26J
In this question we work with a continuous-time Markov chain where the rate of jump may depend on but not on . A virus can be in one of strains , and it mutates to strain with rate from each strain . (Mutations are caused by the chemical environment.) Set .
(a) Write down the Q-matrix (the generator) of the chain in terms of and .
(b) If , that is, , what are the communicating classes of the chain ?
(c) From now on assume that . State and prove a necessary and sufficient condition, in terms of the numbers , for the chain to have a single communicating class (which therefore should be closed).
(d) In general, what is the number of closed communicating classes in the chain ? Describe all open communicating classes of .
(e) Find the equilibrium distribution of . Is the chain reversible? Justify your answer.
(f) Write down the transition matrix of the discrete-time jump chain for and identify its equilibrium distribution. Is the jump chain reversible? Justify your answer.