Paper 4, Section II, 14B

Mathematical Biology
Part II, 2020

Consider the stochastic catalytic reaction

EES,ESE+PE \leftrightharpoons E S, \quad E S \rightarrow E+P

in which a single enzyme EE complexes reversibly to ESE S (at forward rate k1k_{1} and reverse rate k1k_{1}^{\prime} ) and decomposes into product PP (at forward rate k2k_{2} ), regenerating enzyme EE. Assume there is sufficient substrate SS so that this catalytic cycle can continue indefinitely. Let P(E,n)P(E, n) be the probability of the state with enzyme EE and nn products and P(ES,n)P(E S, n) the probability of the state with complex ESE S and nn products, these states being mutually exclusive.

(i) Write down the master equation for the probabilities P(E,n)P(E, n) and P(ES,n)P(E S, n) for n0n \geqslant 0

(ii) Assuming an initial state with zero products, solve the master equation for P(E,0)P(E, 0) and P(ES,0)P(E S, 0).

(iii) Hence find the probability distribution f(τ)f(\tau) of the time τ\tau taken to form the first product.

(iv) Obtain the mean of τ\tau.